Package Biskit :: Package Mod :: Module NCBIStandalone :: Class _BlastConsumer
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Class _BlastConsumer

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Instance Methods [hide private]
  __init__(self)
  round(self, line)
  start_header(self)
  end_header(self)
  end_descriptions(self)
  end_alignment(self)
  end_hsp(self)
  end_database_report(self)
  end_parameters(self)

Inherited from Bio.ParserSupport.AbstractConsumer: __getattr__

Inherited from Bio.ParserSupport.AbstractConsumer (private): _unhandled, _unhandled_section

Inherited from _HeaderConsumer: database_info, query_info, reference, version

Inherited from _DescriptionConsumer: converged, description, description_header, model_sequences, no_hits, nonmodel_sequences, start_descriptions

Inherited from _DescriptionConsumer (private): _parse

Inherited from _AlignmentConsumer: length, multalign, start_alignment, title

Inherited from _HSPConsumer: align, frame, identities, query, sbjct, score, start_hsp, strand

Inherited from _DatabaseReportConsumer: database, gapped, ka_params, ka_params_gap, num_letters_in_database, num_sequences_in_database, posted_date, start_database_report

Inherited from _ParametersConsumer: blast_cutoff, database_length, dropoff_1st_pass, effective_database_length, effective_hsp_length, effective_query_length, effective_search_space, effective_search_space_used, frameshift, gap_penalties, gap_trigger, gap_x_dropoff, gap_x_dropoff_final, hsps_gapped, hsps_no_gap, hsps_prelim_gapped, hsps_prelim_gapped_attempted, matrix, num_extends, num_good_extends, num_hits, num_seqs_better_e, num_sequences, query_length, start_parameters, threshold, window_size


Class Variables [hide private]

Inherited from _HSPConsumer (private): _query_re


Method Details [hide private]

__init__(self)
(Constructor)

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round(self, line)

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Overrides: _DescriptionConsumer.round

start_header(self)

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Overrides: _HeaderConsumer.start_header

end_header(self)

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Overrides: _HeaderConsumer.end_header

end_descriptions(self)

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Overrides: _DescriptionConsumer.end_descriptions

end_alignment(self)

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Overrides: _AlignmentConsumer.end_alignment

end_hsp(self)

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Overrides: _HSPConsumer.end_hsp

end_database_report(self)

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Overrides: _DatabaseReportConsumer.end_database_report

end_parameters(self)

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Overrides: _ParametersConsumer.end_parameters