Package Biskit :: Package Mod :: Module NCBIStandalone :: Class _HSPConsumer

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Class _HSPConsumer

source code

Instance Methods

start_hsp(self)

score(self, line)

identities(self, line)

strand(self, line)

frame(self, line)

query(self, line)

align(self, line)

sbjct(self, line)

end_hsp(self)

Class Variables

_query_re = re.compile(r"Query: \s*(\d+)\s*(.+) (\d+)")

Method Details

start_hsp(self)

score(self, line)

identities(self, line)

strand(self, line)

frame(self, line)

query(self, line)

align(self, line)

sbjct(self, line)

end_hsp(self)

Class Variable Details

_query_re

Value:

re.compile(r"Query: \s*(\d+)\s*(.+) (\d+)")