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Biskit
Package Biskit :: Package Mod :: Module NCBIStandalone :: Class ShortQueryBlastError
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Class ShortQueryBlastError

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Error caused by running a short query sequence through BLAST.

If the query sequence is too short, BLAST outputs warnings and errors: Searching[blastall] WARNING: [000.000] AT1G08320: SetUpBlastSearch failed. [blastall] ERROR: [000.000] AT1G08320: Blast: [blastall] ERROR: [000.000] AT1G08320: Blast: Query must be at least wordsize done

This exception is raised when that condition is detected.

Instance Methods [hide private]

Inherited from exceptions.Exception: __getitem__, __init__, __str__


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