Package Dock

source code

Protein-protein docking related modules

Submodules

Biskit.Dock.Analyzer: Analyze HEX docking result.
Biskit.Dock.Complex: collect and manage information about a docking result
Biskit.Dock.ComplexEvolving: Complex that keeps track of its previous versions (conformations).
Biskit.Dock.ComplexEvolvingList: List of ComplexEvolving instances.
Biskit.Dock.ComplexList: List of Complex objects.
Biskit.Dock.ComplexModelRegistry: This is a helper class for ComplexList.
Biskit.Dock.ComplexRandomizer: Create Complexes with random orientation from a receptor and ligand structure.
Biskit.Dock.ComplexTraj: Trajectory of two proteins.
Biskit.Dock.ContactMaster: Distribute calculation of contact matrices for many complexes over many nodes.
Biskit.Dock.ContactSlave: Calculate contact matrix and some scores for complexes.
Biskit.Dock.Docker: Prepare and run a HEX docking.
Biskit.Dock.FixedList: List that blocks any modifications
Biskit.Dock.HexParser: Parse output file from hex docking run.
Biskit.Dock.hexTools: Various common functions used by the docking modeles.
Biskit.Dock.settings: This module provides Dock-global settings as fields.