Class ChainWriter

source code

Take chain from chainCleaner; write single PDB with unique segementID and no chainID

Instance Methods

__init__(self, path)
Take chains from ChainCleaner and write pdb files.

PDBFile _startPDB(self, chain, fname)
Create pdb file and write header.

removeTER(self, fname)
Remove TER record from PDB.

writeChain(self, chain)
Write single chain as PDB.

Method Details

Take chains from ChainCleaner and write pdb files. File names are created from segid of each chain + '_seg.pdb'

Create pdb file and write header.

Remove TER record from PDB.

Write single chain as PDB. File name will be segid + '_seg.pdb'.